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@@ -10,7 +10,7 @@ editor:
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### Introductory Example: tree dataset from R
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### Introductory Example: tree dataset from R
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``` julia
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``` julia
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using Statistics
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using Statistics
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using Plots
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using Plots
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using RDatasets
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using RDatasets
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@@ -25,7 +25,7 @@ scatter(trees.Volume, trees.Girth,
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the *explanatory variable/covariate* `girth`? Can we predict the volume
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the *explanatory variable/covariate* `girth`? Can we predict the volume
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of a tree given its girth?
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of a tree given its girth?
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``` julia
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``` julia
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scatter(trees.Girth, trees.Volume,
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scatter(trees.Girth, trees.Volume,
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legend=false, xlabel="Girth", ylabel="Volume")
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legend=false, xlabel="Girth", ylabel="Volume")
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plot!(x -> -37 + 5*x)
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plot!(x -> -37 + 5*x)
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@@ -68,7 +68,7 @@ rather use Julia to solve the problem.
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\[use Julia code (existing package) to perform linear regression for
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\[use Julia code (existing package) to perform linear regression for
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`volume ~ girth`\]
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`volume ~ girth`\]
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``` julia
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``` julia
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lm(@formula(Volume ~ Girth), trees)
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lm(@formula(Volume ~ Girth), trees)
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```
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```
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@@ -183,7 +183,7 @@ the corresponding standard errors and the $t$-statistics. Test your
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functions with the \`\`\`tree''' data set and try to reproduce the
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functions with the \`\`\`tree''' data set and try to reproduce the
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output above.
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output above.
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``` julia
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``` julia
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r2(linmod1)
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r2(linmod1)
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r2(linmod2)
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r2(linmod2)
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@@ -232,31 +232,33 @@ $$
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For the models above, these are:
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For the models above, these are:
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+--------------+---------------------+--------------------+
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+---------------+-------------------+------------------+
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| Type of Data | Distribution Family | Link Function |
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| Type of Data | Distribution | Link Function |
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+==============+=====================+====================+
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| | Family | |
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| continuous | Normal | identity: |
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+===============+===================+==================+
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| continuous | Normal | identity: |
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| | | $$ |
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| | | g(x)=x |
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| | | $$ |
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| | | $$ |
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| | | g(x)=x |
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+--------------+---------------------+--------------------+
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| | | $$ |
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| count | Poisson | log: |
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+---------------+-------------------+------------------+
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| count | Poisson | log: |
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| | | $$ |
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| | | g(x) = \log(x) |
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| | | $$ |
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| | | $$ |
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| | | g(x) = \log(x) |
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+--------------+---------------------+--------------------+
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| | | $$ |
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| binary | Bernoulli | logit: |
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+---------------+-------------------+------------------+
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| binary | Bernoulli | logit: |
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| | | $$ |
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| | | g(x) = \log\left |
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| | | $$ |
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| | | ( |
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| | | g(x) = \log\left |
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| | | \ |
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| | | ( |
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| | | f |
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| | | \ |
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| | | rac{x}{1-x}\right) |
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| | | f |
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| | | $$ |
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| | | ra |
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+--------------+---------------------+--------------------+
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| | | c{x}{1-x}\right) |
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| | | $$ |
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+---------------+-------------------+------------------+
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In general, the parameter vector $\beta$ is estimated via maximizing the
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In general, the parameter vector $\beta$ is estimated via maximizing the
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likelihood, i.e.,
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likelihood, i.e.,
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@@ -274,7 +276,7 @@ $$
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In the Gaussian case, the maximum likelihood estimator is identical to
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In the Gaussian case, the maximum likelihood estimator is identical to
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the least squares estimator considered above.
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the least squares estimator considered above.
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``` julia
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``` julia
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using CSV
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using CSV
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using HTTP
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using HTTP
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