Moved book generation code into PDF directory

Start of a reorganization of files to make book more browable and to
reduce the size of links to chapters.

pdf/book.tplx

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+((* extends 'report.tplx' *))
+
+%===============================================================================
+% Latex Book
+%===============================================================================
+
+
+((* block title *))
+\title{Kalman and Bayesian Filters in Python}
+\author{Roger R Labbe Jr}
+\date{}
+\setcounter{secnumdepth}{3}
+\setcounter{tocdepth}{3}
+((* endblock title *))
+
+((* block abstract *))\tableofcontents((* endblock abstract *))
+
+% Define block headings
+% Note: latex will only number headings that aren't starred 
+% (i.e. \subsection , but not \subsection* )
+
+((* block h1 -*))\chapter((* endblock h1 -*))
+((* block h2 -*))\section((* endblock h2 -*))
+((* block h3 -*))\subsection((* endblock h3 -*))
+((* block h4 -*))\subsubsection((* endblock h4 -*))
+((* block h5 -*))\paragraph((* endblock h5 -*))
+((* block h6 -*))\subparagraph((* endblock h6 -*))

pdf/book_to_pdf.bat

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+ipython nbconvert --to latex --template book --post PDF book.ipynb

pdf/build_book

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+#! /bin/bash
+
+echo "merging book..."
+
+python merge_book.py > Kalman_and_Bayesian_Filters_in_Python.ipynb
+
+echo "creating pdf..."
+ipython nbconvert --to latex --template book --post PDF Kalman_and_Bayesian_Filters_in_Python.ipynb
+
+mv Kalman_and_Bayesian_Filters_in_Python ..
+echo "done."
+

pdf/build_book.bat

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+
+python merge_book.py >Kalman_and_Bayesian_Filters_in_Python.ipynb
+
+
+ipython nbconvert --to latex --template book --post PDF Kalman_and_Bayesian_Filters_in_Python.ipynb
+
+

pdf/build_book_html.sh

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+#! /bin/bash
+
+echo "merging book..."
+
+
+echo "creating html..."
+ipython nbconvert --to=html table_of_contents.ipynb
+ipython nbconvert --to=html Preface.ipynb
+ipython nbconvert --to=html 01_gh_filter/g-h_filter.ipynb
+
+
+echo "done."
+

pdf/clean_book

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+#! /bin/bash
+rm --f *.tex
+rm --f *.toc
+rm --f *.aux
+rm --f *.log
+rm --f *.out
+rm --f ./*_files/*.png
+rm --f Kalman_and_Bayesian_Filters_in_Python.ipynb
+rm --f Kalman_and_Bayesian_Filters_in_Python.toc
+rm --f Kalman_and_Bayesian_Filters_in_Python.tex
+rm --f short.ipynb
+
+rmdir  ./*_files/ 2> /dev/null
+
+if (( $# == 1)); then
+  if [ "@1" == all ]; then
+    rm Kalman_and_Bayesian_Filters_in_Python.pdf;
+  fi 
+fi

pdf/clean_book.bat

@@ -0,0 +1,14 @@
+#! /bin/bash
+rm --f *.tex
+rm --f *.toc
+rm --f ./*_files/*.png
+rm --f Kalman_and_Bayesian_Filters_in_Python.ipynb
+rm --f Kalman_and_Bayesian_Filters_in_Python.toc
+rm --f Kalman_and_Bayesian_Filters_in_Python.tex
+rmdir  ./*_files/ 2> /dev/null
+
+if (( $# == 1)); then
+  if [ "@1" == all ]; then
+    rm Kalman_and_Bayesian_Filters_in_Python.pdf;
+  fi 
+fi

pdf/merge_book.py

@@ -0,0 +1,81 @@
+from __future__ import print_function
+import io
+from IPython.nbformat import current
+import sys
+
+
+def remove_formatting(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'input' in c[i].keys():
+            if c[i]['input'][0:16] == '#format the book':
+                del c[i]
+                return
+
+
+def remove_links(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'source' in c[i].keys():
+            if c[i]['source'][0:19] == '[Table of Contents]':
+                del c[i]
+                return
+
+
+def remove_links_add_appendix(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'source' in c[i].keys():
+            if c[i]['source'][0:19] == '[Table of Contents]':
+                c[i]['source'] = '\\appendix'
+                return
+
+
+def merge_notebooks(filenames):
+    merged = None
+    added_appendix = False
+    for fname in filenames:
+        with io.open(fname, 'r', encoding='utf-8') as f:
+            nb = current.read(f, u'json')
+            remove_formatting(nb)
+            if not added_appendix and fname[0:8] == 'Appendix':
+                remove_links_add_appendix(nb)
+                added_appendix = True
+            else:
+                remove_links(nb)
+        if merged is None:
+            merged = nb
+        else:
+            merged.worksheets[0].cells.extend(nb.worksheets[0].cells)
+    merged.metadata.name += "_merged"
+
+    print(current.writes(merged, u'json'))
+
+
+if __name__ == '__main__':
+    #merge_notebooks(sys.argv[1:])
+    merge_notebooks(
+        ['../Preface.ipynb',
+         '../01_gh_filter/g-h_filter.ipynb',
+         '../02_Discrete_Bayes/discrete_bayes.ipynb',
+         '../03_Least_Squares/Least_Squares_Filters.ipynb',
+         '../04_Gaussians/Gaussians.ipynb',
+         '../05_Kalman_Filters/Kalman_Filters.ipynb',
+         '../06_Multivariate_Kalman_filter/Multivariate_Kalman_Filters.ipynb',
+         '../07_Kalman_Filter_Math/Kalman_Filter_Math.ipynb',
+         '../08_Designing_Kalman_Filters/Designing_Kalman_Filters.ipynb',
+         '../09_Extended_Kalman_Filters/Extended_Kalman_Filters.ipynb',
+         '../10_Unscented_Kalman_Filters/Unscented_Kalman_Filter.ipynb',
+         '../11_Ensemble_Kalman_Filter/Ensemble_Kalman_Filters.ipynb',
+         '../12_Designing_Nonlinear_Kalman_Filters/Designing_Nonlinear_Kalman_Filters.ipynb',
+         '../13_HInfinity_Filters/HInfinity_Filters.ipynb',
+         '../14_Smoothing/Smoothing.ipynb',
+         '../15_Adaptive_Filtering/Adaptive_Filtering.ipynb',
+         '../Appendix_A_Installation/Appendix_Installation.ipynb',
+         '../Appendix_B_Symbols_and_Notations/Appendix_Symbols_and_Notations.ipynb'])

pdf/nbmerge.py

@@ -0,0 +1,26 @@
+"""
+usage:
+
+python nbmerge.py A.ipynb B.ipynb C.ipynb > merged.ipynb
+"""
+
+import io
+import os
+import sys
+
+from IPython.nbformat import current
+
+def merge_notebooks(filenames):
+    merged = None
+    for fname in filenames:
+        with io.open(fname, 'r', encoding='utf-8') as f:
+            nb = current.read(f, 'json')
+        if merged is None:
+            merged = nb
+        else:
+            merged.worksheets[0].cells.extend(nb.worksheets[0].cells)
+    merged.metadata.name += "_merged"
+    print current.writes(merged, 'json')
+
+if __name__ == '__main__':
+    merge_notebooks(sys.argv[1:])

pdf/report.tplx

@@ -0,0 +1,28 @@
+
+% Default to the notebook output style
+((* if not cell_style is defined *))
+    ((* set cell_style = 'style_ipython.tplx' *))
+((* endif *))
+
+% Inherit from the specified cell style.
+((* extends cell_style *))
+
+
+%===============================================================================
+% Latex Book
+%===============================================================================
+
+%((* block predoc *))
+%    ((( super() )))
+%    ((* block tableofcontents *))\tableofcontents((* endblock tableofcontents *))
+%((* endblock predoc *))
+
+((* block docclass *))
+\documentclass[4pt]{book}
+\setcounter{chapter}{-1}
+((* endblock docclass *))
+
+((* block preamble *))
+\setcounter{secnumdepth}{3}
+\setcounter{tocdepth}{3}
+((* endblock preamble *))

pdf/short_build_book

@@ -0,0 +1,11 @@
+#! /bin/bash
+
+echo "merging book..."
+
+python short_merge_book.py > short.ipynb
+
+echo "creating pdf..."
+ipython nbconvert --to latex --template book --post PDF short.ipynb
+
+echo "done."
+

pdf/short_merge_book.py

@@ -0,0 +1,65 @@
+from __future__ import print_function
+import io
+from IPython.nbformat import current
+import sys
+
+def remove_formatting(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'input' in c[i].keys():
+            if c[i]['input'][0:16] == '#format the book':
+                del c[i]
+                return
+
+def remove_links(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'source' in c[i].keys():
+            if c[i]['source'][0:19] == '[Table of Contents]':
+                del c[i]
+                return
+
+def remove_links_add_appendix(nb):
+    w = nb['worksheets']
+    node = w[0]
+    c = node['cells']
+    for i in range (len(c)):
+        if 'source' in c[i].keys():
+            if c[i]['source'][0:19] == '[Table of Contents]':
+                c[i]['source'] = '\\appendix'
+                return
+
+
+def merge_notebooks(filenames):
+    merged = None
+    added_appendix = False
+    for fname in filenames:
+        with io.open(fname, 'r', encoding='utf-8') as f:
+            nb = current.read(f, u'json')
+            remove_formatting(nb)
+            if not added_appendix and fname[0:8] == 'Appendix':
+                remove_links_add_appendix(nb)
+                added_appendix = True
+            else:
+                remove_links(nb)
+        if merged is None:
+            merged = nb
+        else:
+            merged.worksheets[0].cells.extend(nb.worksheets[0].cells)
+    merged.metadata.name += "_merged"
+
+    print(current.writes(merged, u'json'))
+
+
+if __name__ == '__main__':
+    #merge_notebooks(sys.argv[1:])
+    merge_notebooks(
+        ['Preface.ipynb',
+         '01_gh_filter/g-h_filter.ipynb',
+         '02_Discrete_Bayes/discrete_bayes.ipynb',
+         'Appendix_A_Installation/Appendix_Installation.ipynb',
+         'Appendix_B_Symbols_and_Notations/Appendix_Symbols_and_Notations.ipynb'])

pdf/update_pdf.sh

@@ -0,0 +1,8 @@
+#! /bin/bash
+
+git checkout gh-pages
+git checkout master Kalman_and_Bayesian_Filters_in_Python.pdf
+git add Kalman_and_Bayesian_Filters_in_Python.pdf
+git commit -m 'updating PDF'
+git push
+git checkout master