Dev container (#36)

* Create .python-version

* Create .gitignore

* Create Makefile

* remove Dockerfile

* remove docker workflow

* startup.sh

* devcontainer

* README with link

* Update Makefile

* obsolete python-version

* Update README.md

* Update README.md

* Update README.md

* Update devcontainer.json

no browser option for devContainer

* introducing a first test

* introducing a first test

* introducing a manual release job

* introducing a manual release job

* Update README.md

---------

Co-authored-by: Jonathan Taylor <jonathan.taylor@stanford.edu>

.github/workflows/docker.yml

@@ -1,42 +0,0 @@
-name: Publish Docker image
-
-on:
-  workflow_dispatch:
-  push:
-    branches:
-      - stable
-    tags:
-      - v*
-
-jobs:
-
-  push_to_registry:
-    name: Push Docker image to Docker Hub
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out the repo
-        uses: actions/checkout@v3
-
-      - name: Log in to Docker Hub
-        uses: docker/login-action@v2
-        with:
-          username: ${{ secrets.DOCKER_USERNAME }}
-          password: ${{ secrets.DOCKER_PASSWORD }}
-
-      - name: Extract metadata (tags, labels) for Docker
-        id: meta
-        uses: docker/metadata-action@v4
-        with:
-          images: jetaylor74/islp_labs
-          tags: |
-             type=ref,event=branch
-             type=semver,pattern={{raw}}
-
-      - name: Build and push Docker image
-        uses: docker/build-push-action@v4
-        with:
-          context: .
-          file: .docker/Dockerfile
-          push: true
-          tags: ${{ steps.meta.outputs.tags }}
-          labels: ${{ steps.meta.outputs.labels }}

.github/workflows/release.yml

@@ -0,0 +1,21 @@
+name: Bump version and publish
+
+on:
+  #push:
+  workflow_dispatch
+
+permissions:
+  contents: write
+
+jobs:
+  tagging:
+    runs-on: ubuntu-latest
+    outputs:
+      new_tag: ${{ steps.tag_step.outputs.new_tag }}
+
+    steps:
+      - name: Generate Tag
+        id: tag_step
+        uses: tschm/cradle/actions/tag@v0.1.57
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/test.yml

@@ -0,0 +1,60 @@
+# testing all notebooks
+name: TEST
+
+on:
+  - push
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        python-version: ['3.11', '3.12']
+        #notebook: [ Ch02-statlearn-lab.ipynb ]. # Ch02 is tricky but we have a solution for it
+        notebook: [ Ch03-linreg-lab.ipynb ]
+        #            Ch04-classification-lab.ipynb,
+        #            Ch05-resample-lab.ipynb,
+        #            Ch06-varselect-lab.ipynb,
+        #            Ch07-nonlin-lab.ipynb,
+        #            Ch08-baggboost-lab.ipynb,
+        #            Ch09-svm-lab.ipynb,
+        #            Ch10-deeplearning-lab.ipynb,
+        #            Ch11-surv-lab.ipynb,
+        #            Ch12-unsup-lab.ipynb,
+        #            Ch13-multiple-lab.ipynb]
+        #exclude:
+        #  - python-version: '3.11'
+        #    notebook: Ch10-deeplearning-lab.ipynb
+
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@v5
+      #with:
+      #  version: "0.5.15"
+
+
+    #- name: Set up Python
+    #  shell: bash
+    #  run: |
+    #    uv python install ${{ matrix.python-version }}
+
+    - name: Create venv
+      shell: bash
+      run: uv venv --python ${{ matrix.python-version }}
+
+    - name: Install requirements
+      shell: bash
+      run: |
+        uv pip install --upgrade pip
+        uv pip install -r requirements.txt
+        uv pip install pytest nbmake
+
+    - name: Test
+      shell: bash
+      run: |
+        uv run pytest --nbmake --nbmake-timeout=3600 -vv ${{ matrix.notebook }}