added references, minor typos, TOC, todo: move dppm to ddpm notebook

_toc.yml

@@ -10,8 +10,9 @@ parts:
     - file: overview-burgers-forw.ipynb
     - file: overview-ns-forw.ipynb
     - file: overview-optconv.md
+- caption: Supervised Training
+  chapters:
   - file: supervised.md
-    sections:
   - file: supervised-airfoils.ipynb
   - file: supervised-discuss.md
 - caption: Physical Losses
@@ -32,6 +33,12 @@ parts:
   - file: diffphys-code-sol.ipynb
   - file: diffphys-code-control.ipynb
   - file: diffphys-discuss.md
+- caption: Probabilistic Learning
+  chapters:
+  - file: probmodels-intro.md
+  - file: probmodels-ddpm-fm.ipynb
+  - file: bayesian-intro.md
+  - file: bayesian-code.ipynb
 - caption: Reinforcement Learning
   chapters:
   - file: reinflearn-intro.md
@@ -45,10 +52,6 @@ parts:
   - file: physgrad-hig.md
   - file: physgrad-hig-code.ipynb
   - file: physgrad-discuss.md
-- caption: PBDL and Uncertainty
-  chapters:
-  - file: bayesian-intro.md
-  - file: bayesian-code.ipynb
 - caption: Fast Forward Topics
   chapters:
   - file: others-intro.md

diffphys-code-ns.ipynb

@@ -355,7 +355,7 @@
    ],
    "source": [
     "# neat phiflow helper function:\n",
-    "vis.plot(field.vec_length(velocity_grad)) # show magnitude"
+    "v = vis.plot(field.vec_length(velocity_grad)) # show magnitude"
    ]
   },
   {

references.bib

@@ -1032,6 +1032,41 @@
   year={2019}
 }
 
+# prob mod
+
+@article{goodfellow2014gan,
+  title={Generative adversarial networks},
+  author={Goodfellow, Ian and Pouget-Abadie, Jean and Mirza, Mehdi and Xu, Bing and Warde-Farley, David and Ozair, Sherjil and Courville, Aaron and Bengio, Yoshua},
+  journal={Advances in neural information processing systems},
+  volume={27},
+  year={2014}
+}
+
+@article{kobyzev2020nf,
+  title={Normalizing flows: An introduction and review of current methods},
+  author={Kobyzev, Ivan and Prince, Simon JD and Brubaker, Marcus A},
+  journal={IEEE transactions on pattern analysis and machine intelligence},
+  volume={43}, number={11},
+  year={2020},
+  publisher={IEEE}
+}
+
+@article{chen2019node,
+  title={Neural Ordinary Differential Equations}, 
+  author={Ricky T. Q. Chen and Yulia Rubanova and Jesse Bettencourt and David Duvenaud},
+  journal={arXiv:1806.07366}, year={2019} 
+}
+
+@article{vincent2011dsm,
+  title={A connection between score matching and denoising autoencoders},
+  author={Vincent, Pascal},
+  journal={Neural computation},
+  volume={23},
+  number={7},
+  pages={1661--1674},
+  year={2011},
+  publisher={MIT Press}
+}
 
 @article{lipman2022flow,
   title={Flow matching for generative modeling},