Fixed PDF generation re %matplotlib magic
Fixed the scripts that comment out the matplotlib magic. It was commenting out all of the magics - the first one, and ones in markdown cells. It should only comment out the ones in code cells, and leave the first one.
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@@ -14,3 +14,4 @@ rm --f chapter.pdf
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rmdir /S /Q book_files
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rmdir /S /Q chapter_files
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rmdir /S /Q tmp
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