Fixed PDF generation re %matplotlib magic
Fixed the scripts that comment out the matplotlib magic. It was commenting out all of the magics - the first one, and ones in markdown cells. It should only comment out the ones in code cells, and leave the first one.
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@@ -1,5 +1,5 @@
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rem call run_notebooks
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rem cd ..
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call run_notebooks
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cd ..
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ipython merge_book.py
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jupyter nbconvert --to latex --template book book.ipynb
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