From b15ed5f7b441104e0b6427493ca5f04c59a2d658 Mon Sep 17 00:00:00 2001 From: tndoan Date: Wed, 16 Dec 2020 09:49:11 -0500 Subject: [PATCH] fix the figure --- Chapter_01.ipynb | 345 +++++++++++++++++++++++------------------------ 1 file changed, 172 insertions(+), 173 deletions(-) diff --git a/Chapter_01.ipynb b/Chapter_01.ipynb index ad85dd2..47b7e82 100644 --- a/Chapter_01.ipynb +++ b/Chapter_01.ipynb @@ -2,18 +2,9 @@ "cells": [ { "cell_type": "code", - "execution_count": 16, + "execution_count": 1, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "┌ Info: Precompiling StatsPlots [f3b207a7-027a-5e70-b257-86293d7955fd]\n", - "└ @ Base loading.jl:1278\n" - ] - } - ], + "outputs": [], "source": [ "using CSV\n", "using DataFrames\n", @@ -6673,7 +6664,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": 2, "metadata": {}, "outputs": [], "source": [ @@ -6682,176 +6673,184 @@ }, { "cell_type": "code", - "execution_count": 35, + "execution_count": 6, "metadata": {}, "outputs": [ { - "name": "stdout", - "output_type": "stream", - "text": [ - "2\n", - "-1.06\n", - "3\n", - "-2.19\n", - "4\n", - "-1.71\n", - "5\n", - "-2.61\n", - "6\n", - "-0.825\n", - "7\n", - "-0.7\n", - "8\n", - "-0.92\n", - "9\n", - "-0.705\n", - "10\n", - "-0.9\n", - "11\n", - "-1.654981\n", - "12\n", - "-1.07\n", - "13\n", - "-1.3\n", - "14\n", - "-1.75998\n", - "15\n", - "-2.504971\n", - "16\n", - "-1.37\n", - "17\n", - "-2.48\n", - "18\n", - "-1.96\n", - "19\n", - "-1.105\n", - "20\n", - "-1.284981\n", - "21\n", - "-1.36999\n", - "22\n", - "-1.5\n", - "23\n", - "-0.63\n", - "24\n", - "-0.5949903\n", - "25\n", - "-0.54\n", - "26\n", - "-0.82\n", - "27\n", - "-1.475\n", - "28\n", - "-2.62\n", - "29\n", - "-1.61001\n", - "30\n", - "-0.9\n", - "31\n", - "-1.67\n", - "32\n", - "-1.33\n", - "33\n", - "-0.78\n", - "34\n", - "-1.21001\n", - "35\n", - "-1.145\n", - "36\n", - "-1.55\n", - "37\n", - "-1.085\n", - "38\n", - "-1.08\n", - "39\n", - "-0.73\n", - "40\n", - "-1.29\n", - "41\n", - "-1.62998\n", - "42\n", - "-1.15002\n", - "43\n", - "-1.285\n", - "44\n", - "-1.705\n", - "45\n", - "-1.415\n", - "46\n", - "-1.24\n", - "47\n", - "-1.385\n", - "48\n", - "-0.8\n", - "49\n", - "-1.9325\n", - "50\n", - "-1.44\n", - "51\n", - "-2.66\n", - "52\n", - "-2.02\n", - "53\n", - "-1.52\n", - "54\n", - "-1.33\n", - "55\n", - "-0.675\n", - "56\n", - "-0.8449902\n", - "57\n", - "-0.8999805\n", - "58\n", - "-1.03\n", - "59\n", - "-0.785\n", - "60\n", - "-1.55\n", - "61\n", - "-1.35\n", - "62\n", - "-1.709981\n", - "63\n", - "-1.185\n", - "64\n", - "-1.485\n", - "(64, 6831)\n" - ] - }, - { - "ename": "LoadError", - "evalue": "Cannot convert Float64 to series data for plotting", - "output_type": "error", - "traceback": [ - "Cannot convert Float64 to series data for plotting", - "", - "Stacktrace:", - " [1] error(::String) at ./error.jl:33", - " [2] _prepare_series_data(::Float64) at /home/nam/.julia/packages/RecipesPipeline/tkFmN/src/series.jl:8", - " [3] _series_data_vector(::Float64, ::Dict{Symbol,Any}) at /home/nam/.julia/packages/RecipesPipeline/tkFmN/src/series.jl:27", - " [4] macro expansion at /home/nam/.julia/packages/RecipesPipeline/tkFmN/src/series.jl:138 [inlined]", - " [5] apply_recipe(::Dict{Symbol,Any}, ::Type{RecipesPipeline.SliceIt}, ::Float64, ::Float64, ::Nothing) at /home/nam/.julia/packages/RecipesBase/aQmWx/src/RecipesBase.jl:281", - " [6] _process_userrecipes!(::Plots.Plot{Plots.GRBackend}, ::Dict{Symbol,Any}, ::Tuple{Float64,Float64}) at /home/nam/.julia/packages/RecipesPipeline/tkFmN/src/user_recipe.jl:35", - " [7] recipe_pipeline!(::Plots.Plot{Plots.GRBackend}, ::Dict{Symbol,Any}, ::Tuple{Float64,Float64}) at /home/nam/.julia/packages/RecipesPipeline/tkFmN/src/RecipesPipeline.jl:69", - " [8] _plot!(::Plots.Plot{Plots.GRBackend}, ::Dict{Symbol,Any}, ::Tuple{Float64,Float64}) at /home/nam/.julia/packages/Plots/fewot/src/plot.jl:167", - " [9] plot(::Float64, ::Vararg{Float64,N} where N; kw::Base.Iterators.Pairs{Symbol,Symbol,Tuple{Symbol},NamedTuple{(:seriestype,),Tuple{Symbol}}}) at /home/nam/.julia/packages/Plots/fewot/src/plot.jl:57", - " [10] scatter(::Float64, ::Vararg{Float64,N} where N; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/nam/.julia/packages/RecipesBase/aQmWx/src/RecipesBase.jl:402", - " [11] scatter(::Float64, ::Vararg{Float64,N} where N) at /home/nam/.julia/packages/RecipesBase/aQmWx/src/RecipesBase.jl:402", - " [12] top-level scope at In[35]:9", - " [13] include_string(::Function, ::Module, ::String, ::String) at ./loading.jl:1091" - ] + "data": { + "image/svg+xml": [ + "\n", + "\n", + "\n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + " \n", + " \n", + " \n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n", + "\n" + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" } ], "source": [ "Z1 = minimum(geneData[2])\n", "Z2 = minimum(geneData[3])\n", "\n", - "for i in 2:64\n", - " println(i)\n", - " println(minimum(geneData[i]))\n", - "end\n", - "println(size(geneData))\n", - "scatter(Z1, Z2)" + "# for i in 2:64\n", + "# println(i)\n", + "# println(minimum(geneData[i]))\n", + "# end\n", + "# println(size(geneData))\n", + "# scatter(Z1, Z2)\n", + "scatter(geneData[2], geneData[3], label=false, xlabel=\"X1\", ylabel=\"X2\")" ] }, {